add_inverse_strand()
|
Add inverse strand |
add_seq()
|
Add sequence to GRanges |
bed_to_granges()
|
Read bedfile into GRanges |
char_to_granges()
|
Convert character vector into GRanges |
double_flank()
|
Double flank |
extend_for_pe()
|
Extend ranges for prime editing |
extend_pe_to_gg()
|
Extend prime editing target to find GG sites |
extract_matchranges()
|
Extract matching subranges |
extract_subranges()
|
Extract subranges |
find_gg()
|
Find GG |
find_primespacers()
|
Find prime editing spacers |
find_spacers()
|
Find crispr spacers in targetranges |
genes_to_granges() genefile_to_granges()
|
Convert geneids into GRanges |
gr2dt() dt2gr()
|
GRanges <-> data.table |
has_been_indexed()
|
Has been indexed? |
index_genome()
|
Index genome |
index_targets()
|
Index targets |
plot_intervals()
|
Interval plot GRanges |
plot_karyogram()
|
Karyo/Interval Plot GRanges(List) |
up_flank() down_flank() extend()
|
Extend or Flank GRanges |
write_ranges() read_ranges()
|
Write GRanges to file |